For that reason I decided to use a separate script on the Windows Server to nightly backup all the databases in one shot and then have another process pick up the backup files and store them remotely.
A simple .bat file running nightly did the job. the script also includes compression and versioning and it keeps n versions of the backups, deleting the older ones at the end of the run.
Of course there's more to a site backup than just the database, such as files and settings, but this script only focuses on the databases. I trust with some small tweaks this script can be used for MariaDB and/or in Linux.
